Stem-loop osa-MIR398b

Accession

MI0001052

Description

Oryza sativa osa-MIR398b precursor miRNA

Literature search

44 open access papers mention osa-MIR398b
(151 sentences)

Sequence

603193 reads, 1744.0 reads per million, 142 experiments

ggaguuccuacaGGGGCGAGCUGGGAACACACGGUgaugaggcggucuggucuuucgUGUGUUCUCAGGUCGCCCCUGCcgggacucu
((((((((..(((((((((.((((((((((((((.(((.((.....)).)))..)))))))))))))).)))))))))..))))))))

Structure

        ua         G              -U   g  g 
ggaguucc  caGGGGCGA CUGGGAACACACGG  gau ag c
||||||||  ||||||||| ||||||||||||||  ||| || g
ucucaggg  GUCCCCGCU GACUCUUGUGUgcu  cug uc g
        cC         G              uu   g  u 

Annotation confidence High

Comments

This sequence belongs to the miR398 family of miRNAs, which are predicted to target mRNAs coding for copper superoxide dismutases and cytochrome C oxidase subunit V [1].

Genome context

7: 14598617-14598704 [-]

Mature osa-miR398b-5p

• Accession: MIMAT0055934
• Description: Oryza sativa osa-miR398b-5p mature miRNA
• Sequence: 13 - GGGGCGAGCUGGGAACACACGGU - 35
• Evidence: experimental ; unknown

Mature osa-miR398b-3p

• Accession: MIMAT0000983
• Description: Oryza sativa osa-miR398b-3p mature miRNA
• Sequence: 58 - UGUGUUCUCAGGUCGCCCCUGC - 79
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799