Stem-loop bdi-MIR394

Accession

MI0018115

Description

Brachypodium distachyon bdi-MIR394 precursor miRNA

Literature search

1 open access papers mention bdi-MIR394
(1 sentences)

Sequence

gcaguaguaauagucauguggguuugccaaaggggcgcuuaccgagagcucuUUGGCAUUCUGUCCACCUCCuugcgagucucgcgggagaucucaugaucuguuguugagcuugcagauagcuuggaggugggcauacugccaauggagcuguguaggcuucccuuuguaaaacccauauggcgaagaucaaaccagcu
............(((((((((((((..((((((((.((((((..(.((((((((((((...((((((((((((((((((.(((((((.(((((....))))).))).))))))))))).......)))))))))))...)))))).)))))).))))))).))))))))..)))))))))))))................

Structure

----gcaguaguaaua             gc        c      cg g      -      UUC           -------       u    -   g     u 
                gucauguggguuu  caaagggg gcuuac  a agcucu UUGGCA   UGUCCACCUCC       uugcgag cucg cgg agauc c
                |||||||||||||  |||||||| ||||||  | |||||| ||||||   |||||||||||       ||||||| |||| ||| |||||  
                cgguauacccaaa  guuucccu cggaug  u ucgagg aaccgu   acggguggagg       gacguuc gagu guu ucuag a
ucgaccaaacuagaag             au        u      -- g      u      cau           uucgaua       -    u   g     u 

Annotation confidence Not enough data

Genome context

3: 52316372-52316571 [-]

Mature bdi-miR394

• Accession: MIMAT0020690
• Description: Brachypodium distachyon bdi-miR394 mature miRNA
• Sequence: 53 - UUGGCAUUCUGUCCACCUCC - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 19772667
   Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
   Zhang J, Xu Y, Huan Q, Chong K
   BMC Genomics (2009) 10:449