Stem-loop bdi-MIR394

Accession

MI0018115

Description

Brachypodium distachyon bdi-MIR394 precursor miRNA

Literature search

2 open access papers mention bdi-MIR394
(2 sentences)

Sequence

355404 reads, 5955.0 reads per million, 21 experiments

gcaguaguaauagucauguggguuugccaaaggggcgcuuaccgagagcucuUUGGCAUUCUGUCCACCUCCUugcgagucucgcgggagaucucaugaucuguuguugagcuugcagauagcuuggAGGUGGGCAUACUGCCAAUGGagcuguguaggcuucccuuuguaaaacccauauggcgaagaucaaaccagcu
............(((((((((((((..((((((((.((((((..(.((((((((((((...((((((((((((((((((.(((((((.(((((....))))).))).))))))))))).......)))))))))))...)))))).)))))).))))))).))))))))..)))))))))))))................

Structure

----gcaguaguaaua             gc        c      cg g      -      UUC           -------       u    -   g     u 
                gucauguggguuu  caaagggg gcuuac  a agcucu UUGGCA   UGUCCACCUCC       Uugcgag cucg cgg agauc c
                |||||||||||||  |||||||| ||||||  | |||||| ||||||   |||||||||||       ||||||| |||| ||| |||||  
                cgguauacccaaa  guuucccu cggaug  u ucgaGG AACCGU   ACGGGUGGAgg       gacguuc gagu guu ucuag a
ucgaccaaacuagaag             au        u      -- g      U      CAU           uucgaua       -    u   g     u 

Annotation confidence Low

Genome context

3: 52316372-52316571 [-]

Mature bdi-miR394-5p

• Accession: MIMAT0020690
• Description: Brachypodium distachyon bdi-miR394-5p mature miRNA
• Sequence: 53 - UUGGCAUUCUGUCCACCUCCU - 73
• Evidence: experimental ; Illumina [1]

Mature bdi-miR394-3p

• Accession: MIMAT0057001
• Description: Brachypodium distachyon bdi-miR394-3p mature miRNA
• Sequence: 128 - AGGUGGGCAUACUGCCAAUGG - 148
• Evidence: experimental ; unknown

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 19772667
   Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
   Zhang J, Xu Y, Huan Q, Chong K
   BMC Genomics (2009) 10:449