Stem-loop bdi-MIR167d

Accession

MI0018102

Description

Brachypodium distachyon bdi-MIR167d precursor miRNA

Literature search

3 open access papers mention bdi-MIR167d
(8 sentences)

Sequence

uggacggcucaauuugauggugugagagguUGAAGCUGCCAGCAUGAUCUGAucaccguccaacguaaccgaacacaugucgaucgacuuccgauugcgccgguuaucuugguaggaauauauauauaugagcuuccauugcaaggguucuucAGAUCAUGUUGCAGCUUCACucucucaucaccaccgaaagauccaaauuaa
.....((.((..((((.((((((((((((.(((((((((.((((((((((((...((..((((.(((((((.......((((((((.....)))))).))))))))).))))..)).............((((((.........)))))).))))))))))))))))))))).))))))).))))).)))).)).)).......

Structure

--uggac  c  aa    a     -       u         C            --------------------------------uca  gu    c       aacacau  -      a 
       gg uc  uuug uggug ugagagg UGAAGCUGC AGCAUGAUCUGA                                   cc  ccaa guaaccg       gu cgaucg c
       || ||  |||| ||||| ||||||| ||||||||| ||||||||||||                                   ||  |||| |||||||       || |||||| u
       cc ag  aagc accac acucucu ACUUCGACG UUGUACUAGAcu                                   gg  gguu uauuggc       cg guuagc u
aauuaaa  u  -a    c     u       C         -            ucuugggaacguuaccuucgaguauauauauauaa  au    c       -------  c      c 

Annotation confidence Not enough data

Genome context

3: 3632405-3632608 [-]

Mature bdi-miR167d-5p

• Accession: MIMAT0020677
• Description: Brachypodium distachyon bdi-miR167d-5p mature miRNA
• Sequence: 31 - UGAAGCUGCCAGCAUGAUCUGA - 52
• Evidence: experimental ; Illumina [2]

Mature bdi-miR167d-3p

• Accession: MIMAT0027056
• Description: Brachypodium distachyon bdi-miR167d-3p mature miRNA
• Sequence: 154 - AGAUCAUGUUGCAGCUUCAC - 173
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443