Stem-loop bdi-MIR156j

Accession

MI0029151

Description

Brachypodium distachyon bdi-MIR156j precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

5 open access papers mention bdi-MIR156j
(25 sentences)

Sequence

gugaUGACAGAAGAGAGAGAGCACaacccagcaccagcgugaaacaccggccgucggcccggucgcugaggcaagggccgugugcucucugcucucucugucauggcca
((.((((((((((((((((((((((.(((.((..(((((......(((((((...)).))))))))))..))..)))...)))))))))).)))).)))))))).))..

Structure

--  g        -    -          --a   -a  ac     ugaaac     -  g 
  gu aUGACAGA AGAG AGAGAGCACa   ccc  gc  cagcg      accgg cc  
  || |||||||| |||| ||||||||||   |||  ||  |||||      ||||| || u
  cg uacugucu ucuc ucucucgugu   ggg  cg  gucgc      uggcc gg  
ac  g        c    g          gcc   aa  ga     ------     c  c 

Annotation confidence Not enough data

Genome context

4: 38856201-38856309 [-]

Mature bdi-miR156j

• Accession: MIMAT0035509
• Description: Brachypodium distachyon bdi-miR156j mature miRNA
• Sequence: 5 - UGACAGAAGAGAGAGAGCAC - 24
• Evidence: not_experimental

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145