Stem-loop bdi-MIR166c

Accession

MI0018113

Description

Brachypodium distachyon bdi-MIR166c precursor miRNA

Literature search

2 open access papers mention bdi-MIR166c
(16 sentences)

Sequence

ugaagaugugaagcuauuuugcuucuggguGGAAUGUUGUCUGGUUCAAGGucuugccaugugauuugaggaugaacgguuugugcaugcauaacuuucauuucucuuguuugcgggaucUCGGACCAGGCUUCAUUCCCCucagagauagcuucaaacucgagaucuagcc
........((((((((((.....((((((.((((((..(((((((((.(((((((((.....(((..(((((((((.(((((((....))).)))))))).)))))..))).))))))))).)))))))))..)))))).))))))))))))))))................

Structure

--------ugaagaug          uugcu      u      UU         A         caugu   uu     -    c    -   g 
                ugaagcuauu     ucuggg GGAAUG  GUCUGGUUC AGGucuugc     gau  gagga ugaa gguu ugu c
                ||||||||||     |||||| ||||||  ||||||||| |||||||||     |||  ||||| |||| |||| |||  
                acuucgauag     agacuC CCUUAC  CGGACCAGG Ucuagggcg     uug  cucuu acuu ucaa acg a
ccgaucuagagcucaa          -----      C      UU         C         ----u   uu     u    -    u   u 

Annotation confidence Not enough data

Genome context

3: 33098767-33098938 [+]

Mature bdi-miR166c-3p

• Accession: MIMAT0020688
• Description: Brachypodium distachyon bdi-miR166c-3p mature miRNA
• Sequence: 121 - UCGGACCAGGCUUCAUUCCCC - 141
• Evidence: experimental ; Illumina [2]

Mature bdi-miR166c-5p

• Accession: MIMAT0027064
• Description: Brachypodium distachyon bdi-miR166c-5p mature miRNA
• Sequence: 31 - GGAAUGUUGUCUGGUUCAAGG - 51
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443