Stem-loop bdi-MIR396c

Accession

MI0018101

Description

Brachypodium distachyon bdi-MIR396c precursor miRNA

Literature search

2 open access papers mention bdi-MIR396c
(4 sentences)

Sequence

cgguagcaaaucgcauggcccucucugugaucUUCCACAGCUUUCUUGAACUGcucggaucugccuaauuagaucacggcuuggguuugcacgagagggcaGUUCAAUAAAGCUGUGGGAAAuuucagagagaggccaauugaucggcacaua
..((.((..((((..((((((((((((.(((.((((((((((((.(((((((((((.((((((......))))))....((((........)))).))))))))))).)))))))))))).))).))))))).)))))..))))..))))...

Structure

-cg  a  aa    ca     -       u   c            C           --------------------g      cc 
   gu gc  aucg  uggcc cucucug gau UUCCACAGCUUU UUGAACUGcuc                     gaucug  u
   || ||  ||||  ||||| ||||||| ||| |||||||||||| |||||||||||                     ||||||   
   ca cg  uagu  accgg gagagac uuA AGGGUGUCGAAA AACUUGacggg                     cuagau  a
aua  -  gc    ua     a       u   A            U           agagcacguuuggguucggca      ua 

Annotation confidence Low

Genome context

3: 54968138-54968290 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR396c

Mature bdi-miR396c-5p

• Accession: MIMAT0020676
• Description: Brachypodium distachyon bdi-miR396c-5p mature miRNA
• Sequence: 33 - UUCCACAGCUUUCUUGAACUG - 53
• Evidence: experimental ; Illumina [2]

Mature bdi-miR396c-3p

• Accession: MIMAT0027055
• Description: Brachypodium distachyon bdi-miR396c-3p mature miRNA
• Sequence: 102 - GUUCAAUAAAGCUGUGGGAAA - 122
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443