Accession
MI0001048
Description
Oryza sativa
osa-MIR396c precursor miRNA
Literature search
57 open access papers mention osa-MIR396c
(161 sentences)
(161 sentences)
Sequence
388
reads,
280
reads per million, 2 experiments
ugccaugccuUUCCACAGCUUUCUUGAACUUcucuugugccucacucacuuucauuacuggagagauaugcaucaucaguggaagcuuauagggagaggagugcaagaagagGGUCAAGAAAGCUGUGGGAAGaaauggca
((((((..(((((((((((((((((((.((((((((((.((((.(((.(((((...(((((.((........)).))))))))))......))).))))...))))).))))).)))))))))))))))))))..))))))
((((((..(((((((((((((((((((.((((((((((.((((.(((.(((((...(((((.((........)).))))))))))......))).))))...))))).))))).)))))))))))))))))))..))))))
Structure
gc A - --g a -----a auu a gau
ugccau cuUUCCACAGCUUUCUUGA CUUcu cuugu ccuc cuc cuuuc acugg ga a
|||||| ||||||||||||||||||| ||||| ||||| |||| ||| ||||| ||||| ||
acggua GAAGGGUGUCGAAAGAACU Ggaga gaacg ggag ggg gaagg ugacu cu u
aa G a uga a auauuc --- a acg
Annotation confidence
High
Do you think this miRNA is real?
Comments
This sequence belongs to the miR396 family of miRNAs, which are predicted to target mRNAs coding for Growth Regulating Factor (GRF) transcription factors, rhodenase-like proteins, and kinesin-like protein B [1].
Genome context
Chr2: 34287873-34288013 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR396c
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature osa-miR396c-5p
| Accession | MIMAT0000979 |
| Description | Oryza sativa osa-miR396c-5p mature miRNA |
| Sequence | 11 - UUCCACAGCUUUCUUGAACUU - 31 |
| Evidence | not_experimental |
| Database links |
|
Mature osa-miR396c-3p
| Accession | MIMAT0022865 |
| Description | Oryza sativa osa-miR396c-3p mature miRNA |
| Sequence | 113 - GGUCAAGAAAGCUGUGGGAAG - 133 |
| Evidence |
experimental
Illumina [2] |
| Database links |
|
References
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