Stem-loop bdi-MIR167f

Accession

MI0029155

Description

Brachypodium distachyon bdi-MIR167f precursor miRNA

Literature search

2 open access papers mention bdi-MIR167f
(7 sentences)

Sequence

725680 reads, 13773.0 reads per million, 21 experiments

gugaaagagUGAAGCUGCCAGCAUGAUCUAgcuuugauccaauguaugucucuacguguggauccuuguuagAUCAUGCCUGACAGCCUCAUUUcuucgcaa
(((((.((((((.((((.((((((((((((((...(((((((((((......))))).))))))...))))))))))).))).)))).)))))).)))))..

Structure

--     a      A    C   -           uuu      -     ug 
  gugaa gagUGA GCUG CAG CAUGAUCUAgc   gaucca augua  u
  ||||| |||||| |||| ||| |||||||||||   |||||| |||||   
  cgcuu UUUACU CGAC GUC GUACUAgauug   cuaggu ugcau  c
aa     c      C    A   C           uuc      g     cu 

Annotation confidence High

Genome context

4: 1643731-1643832 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR167f

Mature bdi-miR167f-5p

• Accession: MIMAT0035513
• Description: Brachypodium distachyon bdi-miR167f-5p mature miRNA
• Sequence: 10 - UGAAGCUGCCAGCAUGAUCUA - 30
• Evidence: not_experimental

Mature bdi-miR167f-3p

• Accession: MIMAT0057040
• Description: Brachypodium distachyon bdi-miR167f-3p mature miRNA
• Sequence: 73 - AUCAUGCCUGACAGCCUCAUUU - 94
• Evidence: experimental ; unknown

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145