Stem-loop bdi-MIR5165

Accession

MI0018132

Description

Brachypodium distachyon bdi-MIR5165 precursor miRNA

Sequence

12559 reads, 130.0 reads per million, 21 experiments

uagcuuuggggcagaguuaccaugaauucccugccauaUCUUGGGCUCUAGGUAGGUUCAauccucaauugaaugaaucgaaggaauuaaacccagcagcaaacaaacugaaauuaccaaauugguaauuucuguuuuuugcugcucgauuuaauuccuucguuucaauugaggauauaaccuaccuugagccaaagAUAUGGUGGGAAUUCAUGGUAACCagagcuacaaaaguugggacuauuuacu
(((((((((.......(((((((((((((((.((((((((((.(((((.(((((((((..(((((((((((((.....(((((((((((((.(.(((((((((.((((.((((((((((...)))))))))).))))))))))))).).))))))))))))).)))))))))))))..))))))))).))))).)))))))))))))))))))))))))))))))))).....................

Structure

---------------------         ggcagag               u          G     U         CA             ugaau             c c         c    u          a 
                     uagcuuugg       uuaccaugaauuccc gccauaUCUU GGCUC AGGUAGGUU  auccucaauugaa     cgaaggaauuaaa c agcagcaaa aaac gaaauuacca  
                     |||||||||       ||||||||||||||| |||||||||| ||||| |||||||||  |||||||||||||     ||||||||||||| | ||||||||| |||| |||||||||| a
                     aucgagaCC       AAUGGUACUUAAGGG UGGUAUAgaa ccgag uccauccaa  uaggaguuaacuu     gcuuccuuaauuu g ucgucguuu uuug cuuuaauggu  
ucauuuaucaggguugaaaac         -------               -          a     u         ua             ----u             a c         -    u          u 

Annotation confidence Low

Genome context

4: 33186148-33186396 [-]

Mature bdi-miR5165-5p

• Accession: MIMAT0020707
• Description: Brachypodium distachyon bdi-miR5165-5p mature miRNA
• Sequence: 39 - UCUUGGGCUCUAGGUAGGUUCA - 60
• Evidence: experimental ; Illumina [1,3]

Mature bdi-miR5165-3p

• Accession: MIMAT0027077
• Description: Brachypodium distachyon bdi-miR5165-3p mature miRNA
• Sequence: 198 - AUAUGGUGGGAAUUCAUGGUAACC - 221
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 19772667
   Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
   Zhang J, Xu Y, Huan Q, Chong K
   BMC Genomics (2009) 10:449


3. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443