Stem-loop bdi-MIR395n

Accession

MI0018227

Description

Brachypodium distachyon bdi-MIR395n precursor miRNA

Literature search

3 open access papers mention bdi-MIR395n
(32 sentences)

Sequence

ugguauuaccaugaGUUCCCUGCAAGCACUUCACCaugcacuaccccaagggcuauugUGAAGUGUUUGGGGGAACUCuuggugucacca
((((..(((((.(((((((((.((((((((((((.((((.((......)).)).)).))))))))))))))))))))).)))))..))))

Structure

    au     u         G            C  -  a  ac 
uggu  uacca gaGUUCCCU CAAGCACUUCAC au gc cu  c
||||  ||||| ||||||||| |||||||||||| || || ||   
acca  guggu CUCAAGGGG GUUUGUGAAGUg ua cg ga  c
    cu     u         -            u  u  g  ac 

Annotation confidence Not enough data

Genome context

5: 25457116-25457205 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from bdi-MIR395n

Mature bdi-miR395n-3p

• Accession: MIMAT0020752
• Description: Brachypodium distachyon bdi-miR395n-3p mature miRNA
• Sequence: 59 - UGAAGUGUUUGGGGGAACUC - 78
• Evidence: experimental ; Illumina [1-2]

Mature bdi-miR395n-5p

• Accession: MIMAT0027096
• Description: Brachypodium distachyon bdi-miR395n-5p mature miRNA
• Sequence: 15 - GUUCCCUGCAAGCACUUCACC - 35
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19772667
   Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
   Zhang J, Xu Y, Huan Q, Chong K
   BMC Genomics (2009) 10:449


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443