Stem-loop osa-MIR167i

Accession

MI0001114

Description

Oryza sativa osa-MIR167i precursor miRNA

Literature search

83 open access papers mention osa-MIR167i
(248 sentences)

Sequence

80782 reads, 56184 reads per million, 2 experiments

ugugagaggcUGAAGCUGCCAGCAUGAUCUGguccaugaguugcacugcugaauauauugaauucagccaggagcugcuacugcaguucugaucucgaucugcauucguuguucugagcuauguauggauuugaucgguuugaaggcauccaugucuuuaauuucaucgaucAGAUCAUGUUGCAGCUUCACUcucucacu
.((((((((.(((((((((.((((((((((((((.(((((.....(((((((((.......)))))).)))(((((((....)))))))(((((..(((((((((..(((......))).))))..))))).)))))..(((((((((....))))))))).))))).))))))))))))))))))))))).)))))))).

Structure

u        c         C              c     uugcacugcugaauauauugaauucagccaggagcugcuacugcaguuc     uc     --    uc   gu 
 gugagagg UGAAGCUGC AGCAUGAUCUGguc augag                                                 ugauc  gaucu  gcau  guu  u
 |||||||| ||||||||| |||||||||||||| |||||                                                 |||||  |||||  ||||  |||   
 cacucucU ACUUCGACG UUGUACUAGAcuag uacuu                                                 gcuag  uuagg  ugua  cga  c
u        C         -              c     ------------------------uaauuucuguaccuacggaaguuug     -u     ua    -u   gu 

Annotation confidence High

Comments

This sequence is a predicted paralogue of the previously identified miR167 family [1]. It is predicted to target mRNAs coding for Auxin Response Factors (ARF transcription factors).

Genome context

Chr6: 27674749-27674949 [+]

Mature osa-miR167i-5p

• Accession: MIMAT0001044
• Description: Oryza sativa osa-miR167i-5p mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCUG - 31
• Evidence: not_experimental

Mature osa-miR167i-3p

• Accession: MIMAT0022875
• Description: Oryza sativa osa-miR167i-3p mature miRNA
• Sequence: 173 - AGAUCAUGUUGCAGCUUCACU - 193
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799


2. PubMed ID: 21901091
   Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
   Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
   PLoS Pathog (2011) 7:e1002176