Stem-loop bdi-MIR5199

Accession

MI0018231

Description

Brachypodium distachyon bdi-MIR5199 precursor miRNA

Sequence

852 reads, 6.0 reads per million, 21 experiments

auacuuaaaacgcUUAGAGAUGGGCAAAGUGCUAUCAauuguuugaacaaacuuugcccagucuacgacauugacucgaaccugauugcugaguuUGUUCAUACGGUUGAUAGCACuuagcccaucucuaaacaguuuacguau
((((.((((....((((((((((((.((((((((((((((((.(((((((((((.((.(((....(((.......)))...)))...)).))))))))))).)))))))))))))))).))))))))))))....)))).))))

Structure

    u    acgc            A                u           u  --c   ucua   ca 
auac uaaa    UUAGAGAUGGGC AAGUGCUAUCAauugu ugaacaaacuu gc   cag    cga  u
|||| ||||    |||||||||||| |||||||||||||||| ||||||||||| ||   |||    |||  u
uaug auuu    aaucucuacccg uuCACGAUAGUUGGCA ACUUGUuugag cg   guc    gcu  g
    c    gaca            a                U           u  uua   -caa   ca 

Annotation confidence Low

Genome context

1: 42791417-42791560 [-]

Mature bdi-miR5199-5p

• Accession: MIMAT0057023
• Description: Brachypodium distachyon bdi-miR5199-5p mature miRNA
• Sequence: 14 - UUAGAGAUGGGCAAAGUGCUAUCA - 37
• Evidence: experimental ; unknown

Mature bdi-miR5199-3p

• Accession: MIMAT0020756
• Description: Brachypodium distachyon bdi-miR5199-3p mature miRNA
• Sequence: 96 - UGUUCAUACGGUUGAUAGCAC - 116
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19772667
   Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
   Zhang J, Xu Y, Huan Q, Chong K
   BMC Genomics (2009) 10:449