Stem-loop bdi-MIR160c

Accession

MI0018100

Description

Brachypodium distachyon bdi-MIR160c precursor miRNA

Literature search

2 open access papers mention bdi-MIR160c
(5 sentences)

Sequence

uaaauugaugaucugaucaagacugugcugUGCCUGGCUCCCUGUAUGCCAcacauguagcccagcccaugaaugugguuugccugcugugggugGCGUGCAAGGAGCCAAGCAUGcauuacgcauuaugaucaauuaaucucugguu
...((((((((((((((.......((((.((((.(((((((.((((((((((.(((((((.(.((((((....)).)))).).)))).))).)))))))))).))))))).)))))))).....)))).)))).))))))........

Structure

-----uaa      -    -    caagacu    u    C       C          a   -    c c    -  u 
        auugau gauc ugau       gugc gUGC UGGCUCC UGUAUGCCAc cau guag c agcc ca g
        |||||| |||| ||||       |||| |||| ||||||| |||||||||| ||| |||| | |||| ||  
        uaauua cuag auua       uacG UACG ACCGAGG ACGUGCGgug gug cguc g uugg gu a
uuggucuc      a    u    --cgcau    -    A       A          g   u    c u    u  a 

Annotation confidence Not enough data

Genome context

3: 3414575-3414722 [-]

Mature bdi-miR160c-5p

• Accession: MIMAT0020675
• Description: Brachypodium distachyon bdi-miR160c-5p mature miRNA
• Sequence: 31 - UGCCUGGCUCCCUGUAUGCCA - 51
• Evidence: experimental ; Illumina [2]

Mature bdi-miR160c-3p

• Accession: MIMAT0027054
• Description: Brachypodium distachyon bdi-miR160c-3p mature miRNA
• Sequence: 96 - GCGUGCAAGGAGCCAAGCAUG - 116
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443