Stem-loop bdi-MIR5200c

Accession

MI0018232

Description

Brachypodium distachyon bdi-MIR5200c precursor miRNA

Literature search

3 open access papers mention bdi-MIR5200c
(19 sentences)

Sequence

uaaagccuuagggaguaucuacaguggcaaguacuuuuccaccaagaaagaagaauacuaccagUGUAGAUACUCUCUAAGGCUUua
(((((((((((((((((((((((.(((..((((.(((((..........))))).)))).))).)))))))))))))))))))))))

Structure

                       g   ca    c     cacc 
uaaagccuuagggaguaucuaca ugg  agua uuuuc    a
||||||||||||||||||||||| |||  |||| |||||     
auUUCGGAAUCUCUCAUAGAUGU acc  ucau agaag    a
                       g   -a    a     aaag 

Annotation confidence Not enough data

Genome context

1: 47483433-47483519 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR5200c

Mature bdi-miR5200c

• Accession: MIMAT0020757
• Description: Brachypodium distachyon bdi-miR5200c mature miRNA
• Sequence: 65 - UGUAGAUACUCUCUAAGGCUU - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19772667
   Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
   Zhang J, Xu Y, Huan Q, Chong K
   BMC Genomics (2009) 10:449