Stem-loop bdi-MIR395f

Accession

MI0018221

Description

Brachypodium distachyon bdi-MIR395f precursor miRNA

Literature search

3 open access papers mention bdi-MIR395f
(33 sentences)

Sequence

guuugguguccccgggaGUUCCCUUCAAACACUUUACGaagcaucuuucuaagacuauuugUGAAGUGUUUGGGGGAACUCucggugucaccaagc
((((((((.(.(((((((((((((.(((((((((((((((...((((...))))...)))))))))))))))))))))))))))).).))))))))

Structure

        u c             U               gca    u 
guuuggug c ccgggaGUUCCCU CAAACACUUUACGaa   ucuu  
|||||||| | ||||||||||||| |||||||||||||||   |||| c
cgaaccac g ggcuCUCAAGGGG GUUUGUGAAGUguuu   agaa  
        u u             -               auc    u 

Annotation confidence Not enough data

Genome context

5: 25455426-25455521 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from bdi-MIR395f

Mature bdi-miR395f-3p

• Accession: MIMAT0020746
• Description: Brachypodium distachyon bdi-miR395f-3p mature miRNA
• Sequence: 62 - UGAAGUGUUUGGGGGAACUC - 81
• Evidence: experimental ; Illumina [1-2]

Mature bdi-miR395f-5p

• Accession: MIMAT0027090
• Description: Brachypodium distachyon bdi-miR395f-5p mature miRNA
• Sequence: 18 - GUUCCCUUCAAACACUUUACG - 38
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19772667
   Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
   Zhang J, Xu Y, Huan Q, Chong K
   BMC Genomics (2009) 10:449


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443