Stem-loop bdi-MIR396b

Accession

MI0018125

Description

Brachypodium distachyon bdi-MIR396b precursor miRNA

Literature search

2 open access papers mention bdi-MIR396b
(4 sentences)

Sequence

ggaguaguaaaagagaugcgcgggcaugcuuUCCACAGGCUUUCUUGAACUGugaacucguggggguguucuccucugaauugugucguggaauugcgggcuuguucuuuauccgucgaucucuccgccuguugaugGUUCAAGAAAGCCCAUGGAAAccaugccgccaucuuggucucgcguccccgu
(((...(..(..((((((.((((.((((.((((((..((((((((((((((((.(((..(((((((.((((......))))...((((((((...(((....)))......)))).)))).)))))))..))).))))))))))))))))..)))))).))))))))))))))..)..)...)))....

Structure

----   gua ua aa      c    g    c      CA                g   uc       uguucuccucugaauugu    -    ---auu   g 
    gga   g  a  gagaug gcgg caug uuUCCA  GGCUUUCUUGAACUGu aac  guggggg                  gucg ugga      gcg g
    |||   |  |  |||||| |||| |||| ||||||  |||||||||||||||| |||  |||||||                  |||| ||||      |||  
    ccu   c  u  uucuac cgcc guac AAAGGU  CCGAAAGAACUUGgua uug  cgccucu                  uagc gccu      ugu c
ugcc   gcg uc gg      -    -    c      AC                g   uc       -----------------c    u    auuucu   u 

Annotation confidence Not enough data

Genome context

5: 27112463-27112651 [+]

Mature bdi-miR396b-5p

• Accession: MIMAT0020700
• Description: Brachypodium distachyon bdi-miR396b-5p mature miRNA
• Sequence: 32 - UCCACAGGCUUUCUUGAACUG - 52
• Evidence: experimental ; Illumina [2]

Mature bdi-miR396b-3p

• Accession: MIMAT0027072
• Description: Brachypodium distachyon bdi-miR396b-3p mature miRNA
• Sequence: 138 - GUUCAAGAAAGCCCAUGGAAA - 158
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443