Stem-loop osa-MIR396f

Accession

MI0010563

Description

Oryza sativa osa-MIR396f precursor miRNA

Literature search

57 open access papers mention osa-MIR396f
(142 sentences)

Sequence

14389700 reads, 74817.0 reads per million, 142 experiments

gccaugcucUCCACAGGCUUUCUUGAACUGUGaacucgugugugcaugcuccucauauauuguucuagaucccaugcaugaugcauaucgaucgaucugaucugaauuaggucaucgaugcgcaucuggauccccaucuuguugAUAGUUCAAGAAAGUCCUUGGAaaacauggug
((((((...((((..((((((((((((((((.(((......(((((((.((..((.....)).....))...)))))))(((((.(((((((.((((((((....))))))))))))))).)))))(((....)))....))).))))))))))))))))..))))...)))))).

Structure

-      cuc    CA                G   ucgugugugcaugcuccucauauauuguucuagaucccaugcau     a       c        c 
 gccaug   UCCA  GGCUUUCUUGAACUGU aac                                            gaugc uaucgau gaucugau u
 ||||||   ||||  |||||||||||||||| |||                                            ||||| ||||||| ||||||||  
 ugguac   AGGU  CUGAAAGAACUUGAUA uug                                            cuacg guagcua cuggauua g
g      aaa    UC                g   ------------------------------uucuaccccuaggu     c       -        a 

Annotation confidence High

Genome context

2: 35636546-35636721 [-]

Mature osa-miR396f-5p

• Accession: MIMAT0010070
• Description: Oryza sativa osa-miR396f-5p mature miRNA
• Sequence: 10 - UCCACAGGCUUUCUUGAACUGUG - 32
• Evidence: experimental ; Illumina [1-2]

Mature osa-miR396f-3p

• Accession: MIMAT0015292
• Description: Oryza sativa osa-miR396f-3p mature miRNA
• Sequence: 145 - AUAGUUCAAGAAAGUCCUUGGA - 166
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19903869
   Rice MicroRNA effector complexes and targets
   "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
   "Plant Cell (2009) 21:3421-3435


2. PubMed ID: 19103661
   Characterization and expression profiles of miRNAs in rice seeds
   "Xue LJ, Zhang JJ, Xue HW"
   "Nucleic Acids Res (2009) 37:916-930