miRBase entry: osa-MIR167h

Stem-loop osa-MIR167h


Accession
MI0001113
Description
Oryza sativa osa-MIR167h precursor miRNA

Literature search
82 open access papers mention osa-MIR167h
(255 sentences)

Sequence

81107 reads, 56418 reads per million, 2 experiments
cacaaguuggUGAAGCUGCCAGCAUGAUCUGaugaugaugaugauccaccucucucaucuguguucuugauuaauuacggaucaaucgaucAGGUCAUGCUGUAGUUUCAUCugcugguu
.((.(((.(((((((((((.(((((((((((((..((((..((((((.......(((..........)))........)))))))))))))))))))))))))))))))))).))).)).

Structure
c  a   u           C             ga    ga      -accucuc   ucug 
 ac agu ggUGAAGCUGC AGCAUGAUCUGau  ugau  ugaucc        uca    u
 || ||| ||||||||||| |||||||||||||  ||||  ||||||        |||     
 ug ucg CUACUUUGAUG UCGUACUGGAcua  gcua  acuagg        agu    g
u  g   u           -             --    --      cauuaauu   ucuu 


Annotation confidence Not enough data
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Comments
This sequence is a predicted paralogue of the previously identified miR167 family [1]. It is predicted to target mRNAs coding for Auxin Response Factors (ARF transcription factors).

Genome context
Chr12: 25480618-25480737 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR167h
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR167h-5p

Accession MIMAT0001043
Description Oryza sativa osa-miR167h-5p mature miRNA
Sequence 11 - UGAAGCUGCCAGCAUGAUCUG - 31
Evidence not_experimental
Database links

Mature osa-miR167h-3p

Accession MIMAT0022874
Description Oryza sativa osa-miR167h-3p mature miRNA
Sequence 92 - AGGUCAUGCUGUAGUUUCAUC - 112
Evidence experimental
Illumina [2]
Database links

References

  1. PubMed ID: 15200956
    Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    "Jones-Rhoades MW, Bartel DP"
    "Mol Cell (2004) 14:787-799

  2. PubMed ID: 21901091
    Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
    Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
    PLoS Pathog (2011) 7:e1002176