Stem-loop bdi-MIR5202

Accession

MI0018234

Description

Brachypodium distachyon bdi-MIR5202 precursor miRNA

Sequence

8567 reads, 85.0 reads per million, 21 experiments

gucgacgauuuaacucacgUAACAUAAGUUUGAACUCACaaaaaguauaucauuauguuacgugaguucaaacuuaugUUACGUGAGUUAAAUCGUCGAu
(((((((((((((((((((((((((((((((((((((((.....(((......))).....)))))))))))))))))))))))))))))))))))))))

Structure

                                       aaaaa   ua 
gucgacgauuuaacucacgUAACAUAAGUUUGAACUCAC     gua  u
|||||||||||||||||||||||||||||||||||||||     |||   
uAGCUGCUAAAUUGAGUGCAUUguauucaaacuugagug     uau  c
                                       cauug   ua 

Annotation confidence Low

Genome context

1: 28904144-28904243 [-]

Mature bdi-miR5202-5p

• Accession: MIMAT0057024
• Description: Brachypodium distachyon bdi-miR5202-5p mature miRNA
• Sequence: 20 - UAACAUAAGUUUGAACUCAC - 39
• Evidence: experimental ; unknown

Mature bdi-miR5202-3p

• Accession: MIMAT0020759
• Description: Brachypodium distachyon bdi-miR5202-3p mature miRNA
• Sequence: 79 - UUACGUGAGUUAAAUCGUCGA - 99
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19772667
   Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
   Zhang J, Xu Y, Huan Q, Chong K
   BMC Genomics (2009) 10:449