Stem-loop bdi-MIR169d

Accession

MI0018079

Description

Brachypodium distachyon bdi-MIR169d precursor miRNA

Literature search

3 open access papers mention bdi-MIR169d
(27 sentences)

Sequence

148 reads, 4.0 reads per million, 16 experiments

auggagauggagagccucccuugauuuuggUAGCCAAGAAUGACUUGCCUAugcuugcccucugcuaaccagcuagccaugcaugguaaccaauggacaaauuucuugugguuggcgugguuagugugguugcaugGGUGGGUCUUCUUGGCUAGCCagagcggcucucauccaccaugccaggcca
((((.((((.((((((.(.......(((((((((((((((.(((((((((((((..(((...((((((((((((((((((((((((...)).)))...........)))))))))).))))))))).))).)))))))))))))))))))))).))))))).))))))))))..)))).........

Structure

---------    -a    g      u ccuugau      -         U             uu   cuc         -          -----------   -  u 
         augg  gaug agagcc c       uuuggU AGCCAAGAA GACUUGCCUAugc  gcc   ugcuaacca gcuagccaug           cau gg  
         ||||  |||| |||||| |       |||||| ||||||||| |||||||||||||  |||   ||||||||| ||||||||||           ||| || a
         uacc  cuac ucucgg g       agaCCG UCGGUUCUU CUGGGUGGguacg  ugg   gugauuggu cgguuggugu           gua cc  
accggaccg    ac    -      c -------      A         -             -u   --u         g          ucuuuaaacag   a  a 

Annotation confidence High

Genome context

4: 26242409-26242595 [+]

Mature bdi-miR169d-5p

• Accession: MIMAT0020654
• Description: Brachypodium distachyon bdi-miR169d-5p mature miRNA
• Sequence: 31 - UAGCCAAGAAUGACUUGCCUA - 51
• Evidence: not_experimental

Mature bdi-miR169d-3p

• Accession: MIMAT0056990
• Description: Brachypodium distachyon bdi-miR169d-3p mature miRNA
• Sequence: 137 - GGUGGGUCUUCUUGGCUAGCC - 157
• Evidence: experimental ; unknown

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293