Stem-loop bdi-MIR395d

Accession

MI0018147

Description

Brachypodium distachyon bdi-MIR395d precursor miRNA

Literature search

3 open access papers mention bdi-MIR395d
(30 sentences)

Sequence

10658 reads, 197.0 reads per million, 21 experiments

agcuccuggacgaacgguugguuguuuccuggGGUUCCCUCCAAACACUUCAGCaggucggcuuuccuauacuagcucacaggcugaagggUGAAGUGUUUGGGGAACUCUaggugacaaccgccauuuuaucaaggucaaacugcug
(((.....((((((.(((.(((((((.((((((((((((..(((((((((((.(...(((((((................)))))))..).))))))))))))))))))))))).)))))))))).))).......))).....))).

Structure

-   uccug   -------   c   u       u            UC           G agg       uccuaua 
 agc     gac       gaa ggu gguuguu ccuggGGUUCCC  CAAACACUUCA C   ucggcuu       c
 |||     |||       ||| ||| ||||||| ||||||||||||  ||||||||||| |   |||||||        
 ucg     cug       uuu ccg ccaacag ggaUCUCAAGGG  GUUUGUGAAGU g   agucgga       u
g   ucaaa   gaacuau   a   -       u            --           g -ga       cacucga 

Annotation confidence High

Genome context

3: 14764296-14764443 [-]

Mature bdi-miR395d-5p

• Accession: MIMAT0027082
• Description: Brachypodium distachyon bdi-miR395d-5p mature miRNA
• Sequence: 33 - GGUUCCCUCCAAACACUUCAGC - 54
• Evidence: experimental ; Illumina [2]

Mature bdi-miR395d-3p

• Accession: MIMAT0020723
• Description: Brachypodium distachyon bdi-miR395d-3p mature miRNA
• Sequence: 92 - UGAAGUGUUUGGGGAACUCU - 111
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443