Stem-loop bdi-MIR398b

Accession

MI0018150

Description

Brachypodium distachyon bdi-MIR398b precursor miRNA

Literature search

3 open access papers mention bdi-MIR398b
(4 sentences)

Sequence

6327 reads, 56.0 reads per million, 20 experiments

ggaugggaugcaauugagggaagcugaacccaCAGGAGUGUCACUGAGAACACAggugcagaugccaaugcauggugaguuuucauuuuugcaucgcaauUGUGUUCUCAGGUCACCCCUUUGGguugcuucccuugauuccauggccagguuaugugucaug
...........(((((((((((((..((((((.(((.(((.(.((((((((((((.(((.(((((.((.....(((((....))))))).)))))))).))))))))))))).))).))).))))))))))))))))))).((((((((.....)).))))))

Structure

------------ggaugggaugc             ug      C   A   U A            g   a     c  ugcau     g 
                       aauugagggaagc  aaccca AGG GUG C CUGAGAACACAg ugc gaugc aa     gguga u
                       |||||||||||||  |||||| ||| ||| | |||||||||||| ||| ||||| ||     |||||  
                       uuaguucccuucg  uugGGU UCC CAC G GACUCUUGUGUu acg cuacg uu     uuacu u
guacuguguauuggaccgguacc             --      U   C   U -            a   -     u  -----     u 

Annotation confidence High

Genome context

3: 21918225-21918387 [+]

Mature bdi-miR398b-5p

• Accession: MIMAT0020726
• Description: Brachypodium distachyon bdi-miR398b-5p mature miRNA
• Sequence: 33 - CAGGAGUGUCACUGAGAACACA - 54
• Evidence: not_experimental

Mature bdi-miR398b-3p

• Accession: MIMAT0057014
• Description: Brachypodium distachyon bdi-miR398b-3p mature miRNA
• Sequence: 101 - UGUGUUCUCAGGUCACCCCUUUGG - 124
• Evidence: experimental ; unknown

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293