Stem-loop bdi-MIR395c

Accession

MI0018127

Description

Brachypodium distachyon bdi-MIR395c precursor miRNA

Literature search

3 open access papers mention bdi-MIR395c
(32 sentences)

Sequence

ggcggcagaccacguuugguaauaccaugaGUUCCCUGCAAGCACUUCAUGaggccuaauucuaagggcuacugUGAAGUGUUUGGGGGAACUCuugguguuaccaagcuuuuacaacaaaaggag
(((....).))..((((((((((((((.(((((((((.(((((((((((((.(((((........)))))..)))))))))))))))))))))).)))))))))))))).................

Structure

----ggcggcagaccac              u         G             -a     aau 
                 guuugguaauacca gaGUUCCCU CAAGCACUUCAUG  ggccu   u
                 |||||||||||||| ||||||||| |||||||||||||  |||||    
                 cgaaccauuguggu CUCAAGGGG GUUUGUGAAGUgu  ucggg   c
gaggaaaacaacauuuu              u         -             ca     aau 

Annotation confidence Not enough data

Genome context

5: 25455997-25456122 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from bdi-MIR395c

Mature bdi-miR395c-3p

• Accession: MIMAT0020702
• Description: Brachypodium distachyon bdi-miR395c-3p mature miRNA
• Sequence: 75 - UGAAGUGUUUGGGGGAACUC - 94
• Evidence: experimental ; Illumina [1,3]

Mature bdi-miR395c-5p

• Accession: MIMAT0027074
• Description: Brachypodium distachyon bdi-miR395c-5p mature miRNA
• Sequence: 31 - GUUCCCUGCAAGCACUUCAUG - 51
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 19772667
   Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
   Zhang J, Xu Y, Huan Q, Chong K
   BMC Genomics (2009) 10:449


3. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443