Stem-loop bdi-MIR5201

Accession

MI0018233

Description

Brachypodium distachyon bdi-MIR5201 precursor miRNA

Sequence

cacucUGAUCAUUUGCCCCGUCUUGUagcacugacacgugguccaugccccacaugucagugauacAGGGCGAGGCAAAUGAUCAAAgug
((((.((((((((((((.(((((((((.((((((((.((((........)))).)))))))).))))))))).)))))))))))).))))

Structure

    c            C         g        c    ucc 
cacu UGAUCAUUUGCC CGUCUUGUa cacugaca gugg   a
|||| |||||||||||| ||||||||| |||||||| ||||    
gugA ACUAGUAAACGG GCGGGAcau gugacugu cacc   u
    A            A         a        a    ccg 

Annotation confidence Not enough data

Genome context

2: 42461428-42461517 [-]

Mature bdi-miR5201-3p

• Accession: MIMAT0020758
• Description: Brachypodium distachyon bdi-miR5201-3p mature miRNA
• Sequence: 67 - AGGGCGAGGCAAAUGAUCAAA - 87
• Evidence: experimental ; Illumina [1-2]

Mature bdi-miR5201-5p

• Accession: MIMAT0027098
• Description: Brachypodium distachyon bdi-miR5201-5p mature miRNA
• Sequence: 6 - UGAUCAUUUGCCCCGUCUUGU - 26
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19772667
   Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
   Zhang J, Xu Y, Huan Q, Chong K
   BMC Genomics (2009) 10:449


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443