Stem-loop bdi-MIR160f

Accession

MI0029153

Description

Brachypodium distachyon bdi-MIR160f precursor miRNA

Literature search

2 open access papers mention bdi-MIR160f
(5 sentences)

Sequence

cgggggcugcgggguggcggaugucagugugcggccguaggcuggaccgcggguguuugcuguugcggagauccaccgaggacggagacggaccgaagugcgcaUGCCUGGCUCCCUGUAUGCCgcccgcg
((((((((((((((.(.(((..((..((((((((((((...(((..(((.((((.(((((....))))).))))..)).)..)))..)))).))...))))))..))))).).))))))).))).))))..

Structure

--    -   -       u g   au  ca      ---  -    agg   ga -  -c    g     u 
  cggg ggc ugcgggg g cgg  gu  gugugc   gg ccgu   cug  c cg  gggu uuugc g
  |||| ||| ||||||| | |||  ||  ||||||   || ||||   |||  | ||  |||| |||||  
  gccc CCG AUGUCCC C GUC  CG  cgcgug   cc ggca   ggc  g gc  ccua aggcg u
gc    g   U       U G   --  Ua      aag  a    -ga   ag a  ca    g     u 

Annotation confidence Not enough data

Genome context

5: 19337418-19337548 [-]

Mature bdi-miR160f

• Accession: MIMAT0035511
• Description: Brachypodium distachyon bdi-miR160f mature miRNA
• Sequence: 105 - UGCCUGGCUCCCUGUAUGCC - 124
• Evidence: not_experimental

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145