miRBase entry: osa-MIR390

Stem-loop osa-MIR390


Accession
MI0001690
Description
Oryza sativa osa-MIR390 precursor miRNA

Literature search
37 open access papers mention osa-MIR390
(198 sentences)

Sequence

478 reads, 337 reads per million, 2 experiments
gguauggaacaauccuugAAGCUCAGGAGGGAUAGCGCCucgaaaucaaacuaggCGCUAUCUAUCCUGAGCUCCaugguuuguucuuacc
((((.(((((((.((.((.(((((((((.(((((((((((.(........).))))))))))).))))))))).)).)).)))))))))))

Structure
    u       u  u  A         G           c aaa 
ggua ggaacaa cc ug AGCUCAGGA GGAUAGCGCCu g   u
|||| ||||||| || || ||||||||| ||||||||||| |    
ccau ucuuguu gg aC UCGAGUCCU UCUAUCGCgga c   c
    -       u  u  C         A           u aaa 


Annotation confidence High
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Genome context
Chr3: 34275140-34275230 [-]

Database links

Mature osa-miR390-5p

Accession MIMAT0001588
Description Oryza sativa osa-miR390-5p mature miRNA
Sequence 19 - AAGCUCAGGAGGGAUAGCGCC - 39
Evidence experimental
cloned [1]
Database links

Mature osa-miR390-3p

Accession MIMAT0022888
Description Oryza sativa osa-miR390-3p mature miRNA
Sequence 56 - CGCUAUCUAUCCUGAGCUCC - 75
Evidence experimental
Illumina [2]
Database links

References

  1. PubMed ID: 15805478
    Cloning and characterization of microRNAs from rice
    "Sunkar R, Girke T, Jain PK, Zhu JK"
    "Plant Cell (2005) 17:1397-1411

  2. PubMed ID: 21901091
    Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
    Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
    PLoS Pathog (2011) 7:e1002176