Stem-loop bdi-MIR156b

Accession

MI0018104

Description

Brachypodium distachyon bdi-MIR156b precursor miRNA

Literature search

5 open access papers mention bdi-MIR156b
(27 sentences)

Sequence

guguuguggcagguguggcaaggcuaugggUGACAGAAGAGAGUGAGCACacagcggccagacugcaucuauuccuucggcggcggacacggccgggcauggccggccauggcauggcauacacgaaaacgaaugaugcugcugcugcugcguGCUCACUUCUCUCUCUGUCACCucucgcacacacggcuagcccgccagccuc
.......(((.((((.(((..((((.((((((((((((((((((((((((.(((((((.((.(.(((((.((((.((((...((...((.((((((......)))))).)).....)).....))))...))))))))).)))))))))).)))))))).))))).))))))))).........)).)))).))))))).)))..

Structure

guguugu   a    u   aa    a  ---------         -     -        a       c  a u     u    --c    --gcg  --gga  c      gc 
       ggc ggug ggc  ggcu ug         ggUGACAGA AGAGA GUGAGCAC cagcggc ag c gcauc auuc   uucg     gc     ca ggccgg  a
       ||| |||| |||  |||| ||         ||||||||| ||||| |||||||| ||||||| || | ||||| ||||   ||||     ||     || ||||||   
       ccg ccgc ccg  ucgg ac         CCACUGUCU UCUCU CACUCGug gucgucg uc g cguag uaag   aagc     cg     gu ccggcc  u
-----cu   a    -   -a    c  acacgcucu         C     U        c       -  - u     -    caa    acaua  guacg  a      gg 

Annotation confidence Not enough data

Genome context

3: 39258110-39258314 [-]

Mature bdi-miR156b-5p

• Accession: MIMAT0020679
• Description: Brachypodium distachyon bdi-miR156b-5p mature miRNA
• Sequence: 31 - UGACAGAAGAGAGUGAGCAC - 50
• Evidence: experimental ; Illumina [2]

Mature bdi-miR156b-3p

• Accession: MIMAT0027057
• Description: Brachypodium distachyon bdi-miR156b-3p mature miRNA
• Sequence: 154 - GCUCACUUCUCUCUCUGUCACC - 175
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443