Stem-loop bdi-MIR164b

Accession

MI0018094

Description

Brachypodium distachyon bdi-MIR164b precursor miRNA

Literature search

3 open access papers mention bdi-MIR164b
(17 sentences)

Sequence

1175249 reads, 21523.0 reads per million, 20 experiments

aagagaggagagcucagcgagaaggaccgcguUGGAGAAGCAGGGCACGUGCAugcaugcaacuagagcuuagcuagugucaauucuuccaucucuugugccuggccgggaucgaucuuauauaccgagcuuaauuuggcaccuauuggaugcugcaugCAUGUGUUCUUCUCCUCCAUCacggucuucauuucucucgcuuucuuuac
....(((((((((..((.(((((((((((.(.(((((.((.((((((((((((((((.((((((((.......))))).........((((......(((((.((((((...............))).)))......)))))....))))))))))))))))))))))).)).))))).).)))))))..)))).)).)))))))))..

Structure

aaga         uc  c    --       c u     A  C                u   acuagagcuuagcuagugucaauucu    ucucuu     -----u   -   gaucga 
    gaggagagc  ag gaga  aggaccg g UGGAG AG AGGGCACGUGCAugca gca                          ucca      gugcc      ggc cgg      u
    |||||||||  || ||||  ||||||| | ||||| || |||||||||||||||| |||                          ||||      |||||      ||| |||      c
    uuucuuucg  uc cuuu  uucuggc C ACCUC UC UCUUGUGUACguacgu cgu                          aggu      cacgg      ucg gcc      u
--ca         -c  u    ac       a U     C  U                -   --------------------------    --uauc     uuuaau   a   auauau 

Annotation confidence High

Genome context

1: 14544140-14544348 [+]

Mature bdi-miR164b-5p

• Accession: MIMAT0020669
• Description: Brachypodium distachyon bdi-miR164b-5p mature miRNA
• Sequence: 33 - UGGAGAAGCAGGGCACGUGCA - 53
• Evidence: not_experimental

Mature bdi-miR164b-3p

• Accession: MIMAT0056997
• Description: Brachypodium distachyon bdi-miR164b-3p mature miRNA
• Sequence: 160 - CAUGUGUUCUUCUCCUCCAUC - 180
• Evidence: experimental ; unknown

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293