Accession
MI0001046
Description
Oryza sativa
osa-MIR396a precursor miRNA
Literature search
62 open access papers mention osa-MIR396a
(167 sentences)
(167 sentences)
Sequence
1252085
reads,
8328.0
reads per million, 142 experiments
cuuugugaucUUCCACAGCUUUCUUGAACUGCacgcaugaugaauaaucccuuugguuaauugugaucuggucucugagagaucguaguuagacucgaucgguugcauuggcaucagagagagcaGUUCAAUAAAGCUGUGGGAAAUugcagag
(((((((((.((((((((((((.(((((((((.((((((((.((........)).))))..))))......(((((((..(((((.(((...))))))))...(((....))))))))))..))))))))).)))))))))))).)))))))))
(((((((((.((((((((((((.(((((((((.((((((((.((........)).))))..))))......(((((((..(((((.(((...))))))))...(((....))))))))))..))))))))).)))))))))))).)))))))))
Structure
c C --------------------------------------------------------a -- g uaa
cuuugugau UUCCACAGCUUU UUGAACUGC cgca ugau aa u
||||||||| |||||||||||| ||||||||| |||| |||| ||
gagacguUA AGGGUGUCGAAA AACUUGacg gugu auug uu c
A U agagagacuacgguuacguuggcuagcucagauugaugcuagagagucucuggucua ua g ucc
Annotation confidence
High
Do you think this miRNA is real?
Comments
This sequence belongs to the miR396 family of miRNAs, which are predicted to target mRNAs coding for Growth Regulating Factor (GRF) transcription factors, rhodenase-like proteins, and kinesin-like protein B [1].
Genome context
2: 34280384-34280537 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR396a
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature osa-miR396a-5p
| Accession | MIMAT0000977 |
| Description | Oryza sativa osa-miR396a-5p mature miRNA |
| Sequence | 11 - UUCCACAGCUUUCUUGAACUGC - 32 |
| Evidence | not_experimental |
| Database links |
|
Mature osa-miR396a-3p
| Accession | MIMAT0022863 |
| Description | Oryza sativa osa-miR396a-3p mature miRNA |
| Sequence | 126 - GUUCAAUAAAGCUGUGGGAAAU - 147 |
| Evidence |
experimental
Illumina [2] |
| Database links |
|
References
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