miRBase entry: osa-MIR396a

Stem-loop osa-MIR396a


Accession
MI0001046
Description
Oryza sativa osa-MIR396a precursor miRNA

Literature search
56 open access papers mention osa-MIR396a
(147 sentences)

Sequence

137 reads, 97 reads per million, 2 experiments
cuuugugaucUUCCACAGCUUUCUUGAACUGcacgcaugaugaauaaucccuuugguuaauugugaucuggucucugagagaucguaguuagacucgaucgguugcauuggcaucagagagagcaGUUCAAUAAAGCUGUGGGAAauugcagag
(((((((((.((((((((((((.(((((((((.((((((((.((........)).))))..))))......(((((((..(((((.(((...))))))))...(((....))))))))))..))))))))).)))))))))))).)))))))))

Structure
         c            C         --------------------------------------------------------a    --    g  uaa 
cuuugugau UUCCACAGCUUU UUGAACUGc                                                         cgca  ugau aa   u
||||||||| |||||||||||| |||||||||                                                         ||||  |||| ||    
gagacguua AGGGUGUCGAAA AACUUGacg                                                         gugu  auug uu   c
         A            U         agagagacuacgguuacguuggcuagcucagauugaugcuagagagucucuggucua    ua    g  ucc 


Annotation confidence Not enough data
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Comments
This sequence belongs to the miR396 family of miRNAs, which are predicted to target mRNAs coding for Growth Regulating Factor (GRF) transcription factors, rhodenase-like proteins, and kinesin-like protein B [1].

Genome context
Chr2: 34280384-34280537 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR396a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR396a-5p

Accession MIMAT0000977
Description Oryza sativa osa-miR396a-5p mature miRNA
Sequence 11 - UUCCACAGCUUUCUUGAACUG - 31
Evidence not_experimental
Database links

Mature osa-miR396a-3p

Accession MIMAT0022863
Description Oryza sativa osa-miR396a-3p mature miRNA
Sequence 126 - GUUCAAUAAAGCUGUGGGAA - 145
Evidence experimental
Illumina [2]
Database links

References

  1. PubMed ID: 15200956
    Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    "Jones-Rhoades MW, Bartel DP"
    "Mol Cell (2004) 14:787-799

  2. PubMed ID: 21901091
    Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
    Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
    PLoS Pathog (2011) 7:e1002176