Stem-loop bdi-MIR171b

Accession

MI0018084

Description

Brachypodium distachyon bdi-MIR171b precursor miRNA

Literature search

1 open access papers mention bdi-MIR171b
(2 sentences)

Sequence

32221 reads, 432.0 reads per million, 21 experiments

ccaaggauuacuauacuggcugggagagugcgaUGUUGGCACGGUUCAAUCAAAUCGgguggucucugcaugcacuggcuugcgagcaagcugcgaugauguuucgcuccaucUGAUUGAGCCGUGCCAAUAUCgcaagcuucuuugccuagcaaccuguaccg
...(((.((.(((....(((.(((((..((((((((((((((((((((((((.((.((((((......((((((...(((((....)))))))).))).....)))))).)).))))))))))))))))))))))))..)))))..)))))).)))))......

Structure

---cca   a  a   uacu   -u     ag                        A  C      ucucug   -   cug     c 
      agg uu cua    ggc  gggag  ugcgaUGUUGGCACGGUUCAAUCA AU Gggugg      cau gca   gcuug g
      ||| || |||    |||  |||||  |||||||||||||||||||||||| || ||||||      ||| |||   |||||  
      ucc aa gau    ccg  ucuuc  acgCUAUAACCGUGCCGAGUUAGU ua cucgcu      gua cgu   cgaac a
gccaug   -  c   ----   uu     ga                        c  c      -uugua   g   ---     g 

Annotation confidence High

Genome context

1: 6911133-6911296 [+]

Mature bdi-miR171b-5p

• Accession: MIMAT0056994
• Description: Brachypodium distachyon bdi-miR171b-5p mature miRNA
• Sequence: 34 - UGUUGGCACGGUUCAAUCAAAUCG - 57
• Evidence: experimental ; unknown

Mature bdi-miR171b-3p

• Accession: MIMAT0020659
• Description: Brachypodium distachyon bdi-miR171b-3p mature miRNA
• Sequence: 114 - UGAUUGAGCCGUGCCAAUAUC - 134
• Evidence: not_experimental

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293