Stem-loop bdi-MIR172b

Accession

MI0018121

Description

Brachypodium distachyon bdi-MIR172b precursor miRNA

Literature search

6 open access papers mention bdi-MIR172b
(18 sentences)

Sequence

guucgcggcgaccagucggugauuucugcuguggcaucaucaagauucacacaaaugcaugcuagcuucgucuaugccauccuuucucaucuuucgaucucgaucucggcccuaauuaaguaauuauacccaauuguggaucggccggauuggagaucgauggaugcguggagaggagcuagauuagcuauagcuuaugugugGGAAUCUUGAUGAUGCUGCAUcggacaucagugacuaaaacaaguauggca
(((.((.......(((((.((((.((((.((((((((((((((((((((((((...((.((.(((((..(((((.((..(((((((((((((.((((((((((((.(((((.(((((....)))))...(((....)))...))))))))).)))))))).)))))...))))))))))))))).)))))))))...)))))..))))))))))))))))))).)))).)))).))))).......))..))).

Structure

-   -c  ggcgacc     g    u    c                   --     aau  a  c     uc     u  ca        ---     u        -    u     ---------------c     a 
 guu  gc       agucg ugau ucug uguggcaucaucaagauuc  acaca   gc ug uagcu  gucua gc  uccuuucu   caucu ucgaucuc gauc cggcc                uaauu a
 |||  ||       ||||| |||| |||| |||||||||||||||||||  |||||   || || |||||  ||||| ||  ||||||||   ||||| |||||||| |||| |||||                |||||  
 cgg  ug       ucagu acua aggc ACGUCGUAGUAGUUCUAAG  ugugu   cg au aucga  uagau cg  aggagagg   guagg agcuagag uuag gccgg                auuaa g
a   ua  aacaaaa     g    c    U                   Gg     auu  -  -     -u     -  --        ugc     u        g    -     cuagguguuaacccau     u 

Annotation confidence Not enough data

Genome context

2: 58915755-58916008 [-]

Mature bdi-miR172b

• Accession: MIMAT0020696
• Description: Brachypodium distachyon bdi-miR172b mature miRNA
• Sequence: 204 - GGAAUCUUGAUGAUGCUGCAU - 224
• Evidence: not_experimental

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293