Stem-loop bdi-MIR160e

Accession

MI0018107

Description

Brachypodium distachyon bdi-MIR160e precursor miRNA

Literature search

2 open access papers mention bdi-MIR160e
(5 sentences)

Sequence

uaagguaauuaaugggugauguugccuuccUGCCUGGCUCCCUGAAUGCCAucugagaagcacaccaccgugccuggcguggcuccugguugGCAUUGAGGGAGUCAUGCAGGguugcagguacguccucgcuuacucccuuca
.((((....(((((((.(((((.((((((((((.(((((((((.(((((((.(((.((..(((.(((.......))).)))..)).))).))))))).))))))))).))))))....))))))))))))).)))...))))..

Structure

-u    uaau   -    u     u    ----      C         G       u   a  ag   a   cc 
  aagg    uaa uggg gaugu gccu    uccUGC UGGCUCCCU AAUGCCA cug ga  cac cca  g
  ||||    ||| |||| ||||| ||||    |||||| ||||||||| ||||||| ||| ||  ||| |||  u
  uucc    auu gcuc cugca ugga    gGGACG ACUGAGGGA UUACGgu ggu cu  gug ggu  g
ac    -cuc   c    -     -    cguu      U         G       u   c  cg   c   cc 

Annotation confidence Not enough data

Genome context

3: 41554285-41554428 [+]

Mature bdi-miR160e-5p

• Accession: MIMAT0020682
• Description: Brachypodium distachyon bdi-miR160e-5p mature miRNA
• Sequence: 31 - UGCCUGGCUCCCUGAAUGCCA - 51
• Evidence: experimental ; Illumina [2]

Mature bdi-miR160e-3p

• Accession: MIMAT0027059
• Description: Brachypodium distachyon bdi-miR160e-3p mature miRNA
• Sequence: 93 - GCAUUGAGGGAGUCAUGCAGG - 113
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443