Stem-loop bdi-MIR169k

Accession

MI0018097

Description

Brachypodium distachyon bdi-MIR169k precursor miRNA

Literature search

3 open access papers mention bdi-MIR169k
(27 sentences)

Sequence

ucuuugcauggaaguaggaggccaucuuugaUAGCCAAGGAUGAUUUGCCUGUaaaaccgauugucgucgccucucggugccguuccaggcacucgaagggagggcggcagcaacagguucuauGGGCAAGUCAGCCUGGCUACCcgaguaccucuuacccauauuccaugcca
.....((((((((((((((((....(((.(.((((((.((.(((((((((((((.((((..((((.((((((((((((((((......))))))....)))).)))))).))))..)))).))))))))))))).)))))))).).)))..)))))))).....))))))))..

Structure

ucuuu        -----        ccau   u a      A  A             a    ga    c      -    ----      gu 
     gcauggaa     guaggagg    cuu g UAGCCA GG UGAUUUGCCUGUa aacc  uugu gucgcc ucuc    ggugcc  u
     ||||||||     ||||||||    ||| | |||||| || ||||||||||||| ||||  |||| |||||| ||||    ||||||   
     cguaccuu     cauucucc    gag C AUCGGU CC ACUGAACGGGuau uugg  aacg cggcgg aggg    ucacgg  c
---ac        auacc        --au   c C      -  G             c    ac    a      g    aagc      ac 

Annotation confidence Not enough data

Genome context

1: 1175425-1175598 [+]

Mature bdi-miR169k-5p

• Accession: MIMAT0020672
• Description: Brachypodium distachyon bdi-miR169k-5p mature miRNA
• Sequence: 32 - UAGCCAAGGAUGAUUUGCCUGU - 53
• Evidence: experimental ; Illumina [2]

Mature bdi-miR169k-3p

• Accession: MIMAT0027052
• Description: Brachypodium distachyon bdi-miR169k-3p mature miRNA
• Sequence: 125 - GGGCAAGUCAGCCUGGCUACC - 145
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443