Stem-loop bdi-MIR171f

Accession

MI0029161

Description

Brachypodium distachyon bdi-MIR171f precursor miRNA

Literature search

1 open access papers mention bdi-MIR171f
(2 sentences)

Sequence

492 reads, 11.0 reads per million, 19 experiments

acgacauggCAUGGUAUUGUUUCGGCUCAUGUCcuucucgagcugauggucggaugagaugUGAGCCGAACCAAUAUCACCCauguauucu
...((((((..((((((((.((((((((((((((.((.(((.(....).))))).).))))))))))))).)))))))).)))))).....

Structure

--acg      CA        U             - u  u   g u 
     acaugg  UGGUAUUG UUCGGCUCAUGUC c uc cga c g
     ||||||  |||||||| ||||||||||||| | || ||| |  
     uguaCC  ACUAUAAC AAGCCGAGUguag g ag gcu g a
ucuua      -C        C             a u  -   g u 

Annotation confidence High

Genome context

5: 21672257-21672347 [+]

Mature bdi-miR171f-5p

• Accession: MIMAT0057042
• Description: Brachypodium distachyon bdi-miR171f-5p mature miRNA
• Sequence: 10 - CAUGGUAUUGUUUCGGCUCAUGUC - 33
• Evidence: experimental ; unknown

Mature bdi-miR171f-3p

• Accession: MIMAT0035519
• Description: Brachypodium distachyon bdi-miR171f-3p mature miRNA
• Sequence: 62 - UGAGCCGAACCAAUAUCACCC - 82
• Evidence: not_experimental

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145