miRBase entry: bdi-MIR164e

Stem-loop bdi-MIR164e


Accession
MI0018215
Description
Brachypodium distachyon bdi-MIR164e precursor miRNA
Gene family
MIPF0000045; MIR164

Literature search
3 open access papers mention bdi-MIR164e
(17 sentences)

Sequence

uggugagaaugccccuguUGGAGAAGCAGGGCACGUGCAaagaucggagcacguuucguaugugauguacguaugugcauggaucgcugugcacgcgcuccccuucuccaccauggccuucuuacca
(((((((((.(((..((.((((((((..((((.((((((..((((.(.((((((..(((((.....))))).)))))).).))))....)))))).))))..)))))))).)).))).)))))))))

Structure
         u   cc  u        CA    A      --aa    g a      uu     g 
uggugagaa gcc  ug UGGAGAAG  GGGC CGUGCA    gauc g gcacgu  cguau u
||||||||| |||  || ||||||||  |||| ||||||    |||| | ||||||  ||||| g
accauucuu cgg  ac accucuuc  cucg gcacgu    cuag u cgugua  gcaug a
         c   -u  c        cc    c      gucg    g a      -u     u 


Annotation confidence Not enough data
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Genome context
2: 26808982-26809108 [-]

Database links

Mature bdi-miR164e

Accession MIMAT0020740
Description Brachypodium distachyon bdi-miR164e mature miRNA
Sequence 19 - UGGAGAAGCAGGGCACGUGCA - 39
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19772667
    Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
    Zhang J, Xu Y, Huan Q, Chong K
    BMC Genomics (2009) 10:449