miRBase entry: bdi-MIR395m

Stem-loop bdi-MIR395m


Accession
MI0018219
Description
Brachypodium distachyon bdi-MIR395m precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
3 open access papers mention bdi-MIR395m
(31 sentences)

Sequence

ugguauuaccaugaguuccuuugcaagcauuucacguacgaggcacuaucccaagggcuauugUGAAGUGUUUGGGGGAACUCuuggugucacca
((((..(((((.(((((((((..(((((((((((((....((.(.((......))).))..)))))))))))))))))))))).)))))..))))

Structure
    au     u         ug             uacg  g a  au 
uggu  uacca gaguuccuu  caagcauuucacg    ag c cu  c
||||  ||||| |||||||||  |||||||||||||    || | ||   
acca  guggu CUCAAGGGG  GUUUGUGAAGUgu    uc g ga  c
    cu     u         --             --ua  g -  ac 


Annotation confidence Not enough data
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Genome context
1: 55440156-55440250 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from bdi-MIR395m
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bdi-miR395m

Accession MIMAT0020744
Description Brachypodium distachyon bdi-miR395m mature miRNA
Sequence 64 - UGAAGUGUUUGGGGGAACUC - 83
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19772667
    Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
    Zhang J, Xu Y, Huan Q, Chong K
    BMC Genomics (2009) 10:449