miRBase entry: bdi-MIR395g

Stem-loop bdi-MIR395g


Accession
MI0018222
Description
Brachypodium distachyon bdi-MIR395g precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
3 open access papers mention bdi-MIR395g
(31 sentences)

Sequence

gguguuaccaggaGUUUCCUGCAAACACUUCACGagugccuauuuuaauggguuguugUGAAGUGUUUGGGGGAACUCuugaugucacc
((((.((.((((((((((((.((((((((((((((..((((((....))))))..)))))))))))))))))))))))))).)).))))

Structure
    u  c            G              gu      u 
ggug ua caggaGUUUCCU CAAACACUUCACGa  gccuau u
|||| || |||||||||||| ||||||||||||||  ||||||  
ccac gu guuCUCAAGGGG GUUUGUGAAGUguu  ugggua u
    u  a            -              gu      a 


Annotation confidence Not enough data
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Genome context
5: 25455723-25455811 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from bdi-MIR395g
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bdi-miR395g-3p

Accession MIMAT0020747
Description Brachypodium distachyon bdi-miR395g-3p mature miRNA
Sequence 59 - UGAAGUGUUUGGGGGAACUC - 78
Evidence experimental
Illumina [1-2]

Mature bdi-miR395g-5p

Accession MIMAT0027091
Description Brachypodium distachyon bdi-miR395g-5p mature miRNA
Sequence 14 - GUUUCCUGCAAACACUUCACG - 34
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19772667
    Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
    Zhang J, Xu Y, Huan Q, Chong K
    BMC Genomics (2009) 10:449

  2. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443