Stem-loop bdi-MIR395k

Accession

MI0018225

Description

Brachypodium distachyon bdi-MIR395k precursor miRNA

Gene family

MIPF0000016; MIR395

Literature search

3 open access papers mention bdi-MIR395k
(32 sentences)

Sequence

guacuaccaugaGUUCCCUGCAAGCACUUCAUGaggcccaauucugagggcuacugUGAAGUGUUUGGGGGAACUCuugguguuac
(((.(((((.(((((((((.(((((((((((((.(((((........)))))..)))))))))))))))))))))).))))).)))

Structure

   c     u         G             -a     aau 
gua uacca gaGUUCCCU CAAGCACUUCAUG  ggccc   u
||| ||||| ||||||||| |||||||||||||  |||||    
cau guggu CUCAAGGGG GUUUGUGAAGUgu  ucggg   c
   u     u         -             ca     agu 

Annotation confidence Not enough data

Genome context

5: 25456290-25456375 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from bdi-MIR395k

Mature bdi-miR395k-3p

• Accession: MIMAT0020750
• Description: Brachypodium distachyon bdi-miR395k-3p mature miRNA
• Sequence: 57 - UGAAGUGUUUGGGGGAACUC - 76
• Evidence: experimental ; Illumina [1-2]

Mature bdi-miR395k-5p

• Accession: MIMAT0027094
• Description: Brachypodium distachyon bdi-miR395k-5p mature miRNA
• Sequence: 13 - GUUCCCUGCAAGCACUUCAUG - 33
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19772667
   Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
   Zhang J, Xu Y, Huan Q, Chong K
   BMC Genomics (2009) 10:449


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443