miRBase entry: bdi-MIR395l

Stem-loop bdi-MIR395l


Accession
MI0018226
Description
Brachypodium distachyon bdi-MIR395l precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
3 open access papers mention bdi-MIR395l
(31 sentences)

Sequence

guuugguauuaucaugaGUUCCCUGCAAGCACUUCACGaggcacuaucccaagggcuacugUGAAGUGUUUGGGGGAACUCuuggugucaccaagc
(((((((..(((((.(((((((((.(((((((((((((.(((.((......)).)))..)))))))))))))))))))))).)))))..)))))))

Structure
       au     u         G             -a   a  au 
guuuggu  uauca gaGUUCCCU CAAGCACUUCACG  ggc cu  c
|||||||  ||||| ||||||||| |||||||||||||  ||| ||   
cgaacca  guggu CUCAAGGGG GUUUGUGAAGUgu  ucg ga  c
       cu     u         -             ca   g  ac 


Annotation confidence Not enough data
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Genome context
5: 25456562-25456657 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from bdi-MIR395l
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bdi-miR395l-3p

Accession MIMAT0020751
Description Brachypodium distachyon bdi-miR395l-3p mature miRNA
Sequence 62 - UGAAGUGUUUGGGGGAACUC - 81
Evidence experimental
Illumina [1-2]

Mature bdi-miR395l-5p

Accession MIMAT0027095
Description Brachypodium distachyon bdi-miR395l-5p mature miRNA
Sequence 18 - GUUCCCUGCAAGCACUUCACG - 38
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19772667
    Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
    Zhang J, Xu Y, Huan Q, Chong K
    BMC Genomics (2009) 10:449

  2. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443