miRBase entry: bdi-MIR395n

Stem-loop bdi-MIR395n


Accession
MI0018227
Description
Brachypodium distachyon bdi-MIR395n precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
3 open access papers mention bdi-MIR395n
(32 sentences)

Sequence

ugguauuaccaugaGUUCCCUGCAAGCACUUCACCaugcacuaccccaagggcuauugUGAAGUGUUUGGGGGAACUCuuggugucacca
((((..(((((.(((((((((.((((((((((((.((((.((......)).)).)).))))))))))))))))))))).)))))..))))

Structure
    au     u         G            C  -  a  ac 
uggu  uacca gaGUUCCCU CAAGCACUUCAC au gc cu  c
||||  ||||| ||||||||| |||||||||||| || || ||   
acca  guggu CUCAAGGGG GUUUGUGAAGUg ua cg ga  c
    cu     u         -            u  u  g  ac 


Annotation confidence Not enough data
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Genome context
5: 25457116-25457205 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from bdi-MIR395n
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bdi-miR395n-3p

Accession MIMAT0020752
Description Brachypodium distachyon bdi-miR395n-3p mature miRNA
Sequence 59 - UGAAGUGUUUGGGGGAACUC - 78
Evidence experimental
Illumina [1-2]

Mature bdi-miR395n-5p

Accession MIMAT0027096
Description Brachypodium distachyon bdi-miR395n-5p mature miRNA
Sequence 15 - GUUCCCUGCAAGCACUUCACC - 35
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19772667
    Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
    Zhang J, Xu Y, Huan Q, Chong K
    BMC Genomics (2009) 10:449

  2. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443