Stem-loop mtr-MIR156j

Accession

MI0018375

Description

Medicago truncatula mtr-MIR156j precursor miRNA

Literature search

11 open access papers mention mtr-MIR156j
(78 sentences)

Sequence

23986 reads, 126.0 reads per million, 107 experiments

acauagaaaUUGACAGAAGAGGGUGAGCACAaaaaaagucuuuaguauauaauguuuauaccauuauuuuugugUGCUCAUACUCUUCUGACAAUUuucaaug
.....(((((((.((((((((.(((((((((..((((((.....(((((.......)))))....)))))).))))))))).)))))))).))))))).....

Structure

acaua       A        G         aa      cuuua     ua 
     gaaaUUG CAGAAGAG GUGAGCACA  aaaagu     guaua  a
     ||||||| |||||||| |||||||||  ||||||     |||||  u
     uuUUAAC GUCUUCUC UACUCGUgu  uuuuua     cauau  g
guaac       A        A         -g      -uuac     uu 

Annotation confidence High

Genome context

chr1: 3468974-3469076 [+]

Mature mtr-miR156j-5p

• Accession: MIMAT0021272
• Description: Medicago truncatula mtr-miR156j-5p mature miRNA
• Sequence: 10 - UUGACAGAAGAGGGUGAGCACA - 31
• Evidence: experimental ; Illumina [1-3]

Mature mtr-miR156j-3p

• Accession: MIMAT0055137
• Description: Medicago truncatula mtr-miR156j-3p mature miRNA
• Sequence: 75 - UGCUCAUACUCUUCUGACAAUU - 96
• Evidence: experimental ; unknown

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010


2. PubMed ID: 21762498
   Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
   Wang T, Chen L, Zhao M, Tian Q, Zhang WH
   BMC Genomics (2011) 12:367


3. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553