miRBase entry: gma-MIR408a

Stem-loop gma-MIR408a


Accession
MI0018647
Description
Glycine max gma-MIR408a precursor miRNA
Gene family
MIPF0000102; MIR408

Literature search
16 open access papers mention gma-MIR408a
(60 sentences)

Sequence

gagacaggacaaagCAGGGGAACAGGCAGAGCAUGgauggagcuaucaacacaauauugucaagaaacugagagugagaggagaaauauguugugguucugcucAUGCACUGCCUCUUCCCUGGCucugucuc
(((((((.....(((.((((((.((((((.((((((.((((((((.(((((.....((.((.....(((...))).....)).))...))))))))))))).)))))).)))))).)))))).))))))))))

Structure
       gacaa   A      C      A      a        u     caaua  g  aagaa   g 
gagacag     agC GGGGAA AGGCAG GCAUGg uggagcua caaca     uu uc     acu  
|||||||     ||| |||||| |||||| |||||| |||||||| |||||     || ||     ||| a
cucuguc     uCG UCCCUU UCCGUC CGUAcu gucuuggu guugu     aa ag     uga  
       -----   G      C      A      c        -     --aua  g  gagag   g 


Annotation confidence Not enough data
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Genome context
chr2: 837414-837546 [+]

Database links

Mature gma-miR408a-3p

Accession MIMAT0021629
Description Glycine max gma-miR408a-3p mature miRNA
Sequence 105 - AUGCACUGCCUCUUCCCUGGC - 125
Evidence experimental
Illumina [1-2]

Mature gma-miR408a-5p

Accession MIMAT0022992
Description Glycine max gma-miR408a-5p mature miRNA
Sequence 15 - CAGGGGAACAGGCAGAGCAUG - 35
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 21663675
    Identification of novel soybean microRNAs involved in abiotic and biotic stresses
    Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
    BMC Genomics (2011) 12:307

  2. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553