Stem-loop gma-MIR408b

Accession

MI0018648

Description

Glycine max gma-MIR408b precursor miRNA

Literature search

19 open access papers mention gma-MIR408b
(57 sentences)

Sequence

11763437 reads, 20169.0 reads per million, 178 experiments

gacaaaggCUGGGAACAGGCAGGGCACGAauggagcuaucaacagaaaaugguaaagugagaaugaaaggagagagagagagagagaucuguuguggcuacgcucAUGCACUGCCUCUUCCCUGGCUcuguc
((((.((.(.(((((.((((((.(((.((.((.(((((.(((((((.........................................)))))))))))).)).)).))).)))))).))))).).)).))))

Structure

    a  g U     C      G   C  a  g     u       aaaugguaaagugagaaug 
gaca ag C GGGAA AGGCAG GCA GA ug agcua caacaga                   a
|||| || | ||||| |||||| ||| || || ||||| |||||||                   a
cugu UC G CCCUU UCCGUC CGU cu gc ucggu guugucu                   a
    c  G U     C      A   A  c  a     -       agagagagagagagagagg 

Annotation confidence High

Genome context

chr3: 42619826-42619957 [-]

Mature gma-miR408b-5p

• Accession: MIMAT0021630
• Description: Glycine max gma-miR408b-5p mature miRNA
• Sequence: 9 - CUGGGAACAGGCAGGGCACGA - 29
• Evidence: experimental ; Illumina [1-2]

Mature gma-miR408b-3p

• Accession: MIMAT0021631
• Description: Glycine max gma-miR408b-3p mature miRNA
• Sequence: 106 - AUGCACUGCCUCUUCCCUGGCU - 127
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553