miRBase entry: gma-MIR166j

Stem-loop gma-MIR166j


Accession
MI0018661
Description
Glycine max gma-MIR166j precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
36 open access papers mention gma-MIR166j
(219 sentences)

Sequence

gguugaugGGAAUGUUGUUUGGCUCGAGGuaacuaugcauggucuuaauuuuguucaucuuugaagcuuuaauuuauggguuucgaucucuuugaucccuugaaacaaagaaagcuuuaaagguuggauuuugaggcuuucUCGGACCAGGCUUCAUUCCCGuaaacc
((((.(((((((((..((((((.((((((((....)))..((((((((....((((((((((((((((((..((((.(((..((((.....)))).))).))))......))))))))))))).))))).))))))))..))))).))))))..))))))))).))))

Structure
    g         UU      C     ------------------------------------------------------------------------------------------------------   a 
gguu augGGAAUG  GUUUGG UCGAG                                                                                                      Gua c
|||| |||||||||  |||||| |||||                                                                                                      |||  
ccaa uGCCCUUAC  CGGACC GGCUc                                                                                                      cgu u
    a         UU      A     uuucggaguuuuagguuggaaauuucgaaagaaacaaaguucccuaguuucucuagcuuuggguauuuaauuucgaaguuucuacuuguuuuaauucuggua   a 


Annotation confidence Not enough data
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Genome context
chr15: 3706979-3707146 [-]

Database links

Mature gma-miR166j-5p

Accession MIMAT0021647
Description Glycine max gma-miR166j-5p mature miRNA
Sequence 9 - GGAAUGUUGUUUGGCUCGAGG - 29
Evidence experimental
Illumina [1]

Mature gma-miR166j-3p

Accession MIMAT0021648
Description Glycine max gma-miR166j-3p mature miRNA
Sequence 142 - UCGGACCAGGCUUCAUUCCCG - 162
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 21663675
    Identification of novel soybean microRNAs involved in abiotic and biotic stresses
    Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
    BMC Genomics (2011) 12:307

  2. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553