Stem-loop gma-MIR169l

Accession

MI0018664

Description

Glycine max gma-MIR169l precursor miRNA

Gene family

MIPF0000037; MIR169_2

Literature search

23 open access papers mention gma-MIR169l
(100 sentences)

Sequence

gagugauuugCAGCCAAGAAUGACUUGCCGGaaugcauauauaugcauuagguaccaacauauauaguuguauuguauaauuuCGGGCAAGUUGUUUUUGGCUACauuuaucuc
(((..(..((.((((((((((((((((((.(((...(((((.((((((((.(((......))).))).))))))))))...))).)))))))))))))))))).))..)..)))

Structure

   ug uu  C                  G   ugc     u     -   g   cc 
gag  a  ug AGCCAAGAAUGACUUGCC Gaa   auaua augca uua gua  a
|||  |  || |||||||||||||||||| |||   ||||| ||||| ||| |||   
cuc  u  aC UCGGUUUUUGUUGAACGG Cuu   uaugu uaugu gau uau  a
   ua uu  A                  G   uaa     -     u   a   ac 

Annotation confidence Not enough data

Genome context

chr14: 5435482-5435595 [+]

Mature gma-miR169l-5p

• Accession: MIMAT0021652
• Description: Glycine max gma-miR169l-5p mature miRNA
• Sequence: 11 - CAGCCAAGAAUGACUUGCCGG - 31
• Evidence: experimental ; Illumina [1]

Mature gma-miR169l-3p

• Accession: MIMAT0022994
• Description: Glycine max gma-miR169l-3p mature miRNA
• Sequence: 84 - CGGGCAAGUUGUUUUUGGCUAC - 105
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553