Stem-loop sequence gma-MIR169m

Accession

MI0018665 (change log)

Description

Glycine max miR169m stem-loop

Gene family

MIPF0000037; MIR169_2

Literature search

24 open access papers mention gma-MIR169m
(97 sentences)

Stem-loop

               c         ug         agcaau   c     uaucuaucuauuu 
5' gaaaguagagug agccaagga  acuugccgg      aag aauaa             u
   |||||||||||| |||||||||  |||||||||      ||| |||||             a
3' cuuuuguuuuac ucgguucuu  ugaacggcc      uuc uuauu             u
               a         gu         -gcacu   -     cuucuuuucuuuc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr13: 21492366-21492488 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gma-MIR169m

• gma-MIR169m: chr13: 21492366-21492488 [+]
• gma-MIR169o: chr13: 21496986-21497084 [+]

Database links

• miRBase Tracker:MI0018665

Mature sequence gma-miR169m

• Accession: MIMAT0021653
• Sequence: 13 - cagccaaggaugacuugccgg - 33
• Evidence: experimental; Illumina [1]

References

1. PMID:21663675 "Identification of novel soybean microRNAs involved in abiotic and biotic stresses" Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R BMC Genomics. 12:307(2011).