Stem-loop gma-MIR319g

Accession

MI0018672

Description

Glycine max gma-MIR319g precursor miRNA

Literature search

17 open access papers mention gma-MIR319g
(45 sentences)

Sequence

31923137 reads, 99062.0 reads per million, 178 experiments

gggaaagagagugaAGGAGUUUCCCUCAGCCCAUUCauggauauaaugaaagauuggguugcugaauuaacugauucauucauacaauaguauucaauuaggguaauauugugugaaugaagagaguauaguaucuauauuggaacccccucuuucucugugcUUGGACUGAAGGGAGCUCCUUCuuuuucuguuccc
(((((((((((.((((((((((((.((((.(((..((((((......((((((..(((((.(........((..(((((((((((((((.(((((.....))))).))))))))))))))).))(((((((...)))))))).)))))..))))))))))))..))).)))).)))))))))))).)))))).)))))

Structure

     -      u            C    C   UU      uauaau      uu     g ---------ugaauuaa  ga               g     a 
gggaa agagag gaAGGAGUUUCC UCAG CCA  Caugga      gaaaga  ggguu c                 cu  uucauucauacaaua uauuc a
||||| |||||| |||||||||||| |||| |||  ||||||      ||||||  ||||| |                 ||  ||||||||||||||| ||||| u
cccuu ucuuuu CUUCCUCGAGGG AGUC GGU  gugucu      cuuucu  cccaa g                 ga  aaguaaguguguuau auggg u
     g      u            A    A   Uc      ------      cc     g uuauaucuaugauauga  -g               a     a 

Annotation confidence High

Genome context

chr2: 40809293-40809490 [+]

Mature gma-miR319g-5p

• Accession: MIMAT0054253
• Description: Glycine max gma-miR319g-5p mature miRNA
• Sequence: 15 - AGGAGUUUCCCUCAGCCCAUUC - 36
• Evidence: experimental ; unknown

Mature gma-miR319g-3p

• Accession: MIMAT0021661
• Description: Glycine max gma-miR319g-3p mature miRNA
• Sequence: 164 - UUGGACUGAAGGGAGCUCCUUC - 185
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307