Stem-loop gma-MIR319m

Accession

MI0018678

Description

Glycine max gma-MIR319m precursor miRNA

Literature search

17 open access papers mention gma-MIR319m
(43 sentences)

Sequence

18253457 reads, 56389.0 reads per million, 178 experiments

auaguuuaagAGAGCUUCCUUCAGUCCACUCauggauggauagaggguuugaauuagcugcugacucauucauucaaacacaauagaacgggugucaugguaugcuauugugaaugccugaaugaugcaggagguaaaguucauccuuuucuugucugugcUUGGACUGAAGGGAGCUCCCUuuuacugu
(((((..(((.(((((((((((((((((..(((((((((..((((((..(((((((.((.(((..(((((((..((..((((((((.((.(......).))...))))))))..))..)))))))..))).)).))..)))))))))))..)))))))))..))))))))))))))))).)))..)))))

Structure

     uu   A                 CU         au      uu     --  g  g   ac       uu  aa        --a  g gu 
auagu  aag GAGCUUCCUUCAGUCCA  Cauggaugg  agaggg  ugaau  ua cu cug  ucauuca  ca  cacaauag   ac g  g
|||||  ||| |||||||||||||||||  |||||||||  ||||||  |||||  || || |||  |||||||  ||  ||||||||   || |   
uguca  uUC CUCGAGGGAAGUCAGGU  gugucuguu  uuuccu  acuug  au ga gac  aguaagu  gu  guguuauc   ug u  u
     uu   C                 Uc         cu      --     aa  g  g   gu       cc  aa        gua  g ac 

Annotation confidence High

Genome context

chr18: 4298047-4298236 [-]

Mature gma-miR319m-5p

• Accession: MIMAT0054259
• Description: Glycine max gma-miR319m-5p mature miRNA
• Sequence: 11 - AGAGCUUCCUUCAGUCCACUC - 31
• Evidence: experimental ; unknown

Mature gma-miR319m-3p

• Accession: MIMAT0021667
• Description: Glycine max gma-miR319m-3p mature miRNA
• Sequence: 162 - UUGGACUGAAGGGAGCUCCCU - 182
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307