Stem-loop gma-MIR396i

Accession

MI0018680

Description

Glycine max gma-MIR396i precursor miRNA

Gene family

MIPF0000047; MIR396

Literature search

25 open access papers mention gma-MIR396i
(148 sentences)

Sequence

uggcccucuuuguauucUUCCACAGCUUUCUUGAACUGcauccauagaguuccuuugcaugcaugccaaggcacucuugcucccacaccuuguuuugcgGUUCAAUAAAGCUGUGGGAAGauacagauaggguca
(((((((.((((((((.((((((((((((.((((((((((.....(((((.((((.(((....))).)))).)))))..................)))))))))).)))))))))))).)))))))).)))))))

Structure

       c        c            C          -------------uccau     u    u   u 
uggcccu uuuguauu UUCCACAGCUUU UUGAACUGca                  agagu ccuu gca g
||||||| |||||||| |||||||||||| ||||||||||                  ||||| |||| |||  
acuggga agacauaG AGGGUGUCGAAA AACUUGgcgu                  ucuca ggaa cgu c
       u        A            U          uuuguuccacacccucgu     c    c   a 

Annotation confidence Not enough data

Genome context

chr17: 8774041-8774175 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR396i

Mature gma-miR396i-5p

• Accession: MIMAT0021669
• Description: Glycine max gma-miR396i-5p mature miRNA
• Sequence: 18 - UUCCACAGCUUUCUUGAACUG - 38
• Evidence: experimental ; Illumina [1]

Mature gma-miR396i-3p

• Accession: MIMAT0021670
• Description: Glycine max gma-miR396i-3p mature miRNA
• Sequence: 100 - GUUCAAUAAAGCUGUGGGAAG - 120
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307