Stem-loop gma-MIR482d

Accession

MI0018681

Description

Glycine max gma-MIR482d precursor miRNA

Gene family

MIPF0000403; MIR482

Literature search

21 open access papers mention gma-MIR482d
(44 sentences)

Sequence

gggggaagacaugggUAUGGGGGGAUUGGGAAGGAAUauccauaagcaaaauauguuauuUCUUCCCUACACCUCCCAUACCacuguuuuuccuc
(((((((((((..(((((((((((...(((((((((((..((((.......)))).)))))))))))....)))))))))))..)))))))))))

Structure

           ug           -AUU           uc    ag 
gggggaagaca  ggUAUGGGGGG    GGGAAGGAAUa  caua  c
|||||||||||  |||||||||||    |||||||||||  ||||  a
cuccuuuuugu  CCAUACCCUCC    CCCUUCUuuau  guau  a
           ca           ACAU           -u    aa 

Annotation confidence Not enough data

Genome context

chr10: 49165318-49165412 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR482d

Mature gma-miR482d-5p

• Accession: MIMAT0021671
• Description: Glycine max gma-miR482d-5p mature miRNA
• Sequence: 16 - UAUGGGGGGAUUGGGAAGGAAU - 37
• Evidence: experimental ; Illumina [1-2]

Mature gma-miR482d-3p

• Accession: MIMAT0021672
• Description: Glycine max gma-miR482d-3p mature miRNA
• Sequence: 61 - UCUUCCCUACACCUCCCAUACC - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553